PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21687.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 650aa    MW: 72303.8 Da    PI: 9.1952
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21687.3genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07551600147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        PK21687.3 551 RRPFSVTEVEALVEAVEELGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 600
                      678999********************9988889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.02E-5353433IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.496546605IPR017930Myb domain
SMARTSM007173.7E-7550603IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-10551601IPR009057Homeodomain-like
SuperFamilySSF466895.38E-15552633IPR009057Homeodomain-like
CDDcd116603.73E-16552602No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MVLKKRLEYG FHGFQVPTIP RAPRSARRRG PNKKKTEDSQ ICAFELLASL AGKLLQESES  60
SSACSNASEG NHRSFDEDVI KHERHAEDTL LKEECFDQGS SEESAFASEI SSQNIGQKLL  120
SKRFLHSERD VVSERTSTRA DLVNVIPTFH NCPPKVETGT LSKANLCNSK DPMELQVEFP  180
TMVNLENDVK LPSLREHVSN ASFSKHRNDI KLVGRDDDEN CAGQNKSSTK VKAFRPSVRI  240
GDRKIRKLLT SKYWKVAPKL RDCESFRSDG GMKPLYNKRK SCYSRDRYQH NTFYKRRKLF  300
DRGSVVLSDG GFSSESVSNS PEKGKSGEKN GFNGMLHGAG VSSSVISRQG SFHSKDSHVK  360
LSIKSFKIPE LFIEVPETAT IGSLRRTVME TVTAILGGGL HVGVLLQGKK VKDDNKTLHQ  420
TGISCKDNLD GLGFTLEPNT MPASPSIYTD DPLPSLSCDE PETLRSLGAP LVDSVISDAL  480
FETTLPSTNT GALVESNLES VSCHNDSLTD NIMSDSRALV VVPAISMEAL AVVPANKKSK  540
RSSELAQRRT RRPFSVTEVE ALVEAVEELG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL  600
VHTARISPQQ RRGEPVPQDL LDRVLTAHAY WSQHQAKQQL KQQPETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-575346411107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277297KRKSCYSRDRYQHNTFYKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096584.10.0Telomere repeat-binding protein 4
SwissprotQ9FFY91e-177TRP4_ARATH; Telomere repeat-binding protein 4
TrEMBLW9R2A70.0W9R2A7_9R
STRINGPOPTR_0010s20990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-98TRF-like 2